Lisa Pokorny

Investigadora postdoctoral
Artículos científicos
2023Fernández, P., Leitch, I.J., Leitch, A.R., Hidalgo, O., Christenhusz, M.J.M., Pokorny, L., Pellicer, J. (2023). Giant Fern Genomes Show Complex Evolution Patterns: A Comparative Analysis in Two Species of Tmesipteris (Psilotaceae). International Journal of Molecular Sciences 24(3):2708. Open Access
2021Rincón-Barrado, M., Olsson, S., Villaverde, T., Moncalvillo, B., Pokorny, L., Forrest, A., Riina, R., Sanmartín, I. (2021). Ecological and geological processes impacting speciation modes drive the formation of wide-range disjunctions within tribe Putorieae (Rubiaceae). Journal of Systematics and Evolution 59(5):915-934. Open Access
2020Escudero, M., Nieto Feliner, G., Pokorny, L., Spalink, D., Viruel, J. (2020). Editorial: Phylogenomic Approaches to Deal With Particularly Challenging Plant Lineages. Frontiers in Plant Science 11:591762. Open Access
2020Larridon, I., Villaverde, T., Zuntini, A.R., Pokorny, L., Brewer, G.E., Epitawalage, N., Fairlie, I., Hahn, M., Kim, J., Maguilla, E., Maurin, O., Xanthos, M., Hipp, A.L., Forest, F., Baker, W.J. (2020). Tackling Rapid Radiations With Targeted Sequencing. Frontiers in Plant Science 10:art.1655. Open Access
2020Shee Z.Q., Frodin D.G., Cámara-Leret R., Pokorny L. (2020). Reconstructing the Complex Evolutionary History of the Papuasian Schefflera Radiation Through Herbariomics. Frontiers in Plant Science 11:258. Open Access
2019Leebens-Mack, J. H., Barker, M. S., Carpenter, E. J., Deyholos, M. K., Gitzendanner, M. A., Graham, S. W., Grosse, I., Li, Z., Melkonian, M., Mirarab, S., Porsch, M., Quint, M., Rensing, S. A., Soltis, D. E., Soltis, P. S., Stevenson, D. W., Ullrich, K. K., Wickett, N. J., DeGironimo, L., Edger, P. P., Jordon-Thaden, I. E., Joya, S., Liu, T., Melkonian, B., Miles, N. W., Pokorny, L., Quigley, C., Thomas, P., Villarreal, J. C., Augustin, M. M., Barrett, M. D., Baucom, R. S., Beerling, D. J., Benstein, R. M., Biffin, E., Brockington, S. F., Burge, D. O., Burris, J. N., Burris, K. P., Burtet-Sarramegna, V., Caicedo, A. L., Cannon, S. B., Çebi, Z., Chang, Y., Chater, C., Cheeseman, J. M., Chen, T., Clarke, N. D., Clayton, H., Covshoff, Sarah, Crandall-Stotler, B. J., Cross, H., dePamphilis, C. W., Der, J. P., Determann, R., Dickson, R. C., Di Stilio, V. S., Ellis, S., Fast, E., Feja, N., Field, K. J., Filatov, D. A., Finnegan, P. M., Floyd, S. K., Fogliani, B., García, N., Gâteblé, G., Godden, G. T., Goh, F. (Qi Yun), Greiner, S., Harkess, A., Heaney, J. M., Helliwell, K. E., Heyduk, K., Hibberd, J. M., Hodel, R. G. J., Hollingsworth, P. M., Johnson, M. T. J., Jost, R., Joyce, B., Kapralov, M. V., Kazamia, E., Kellogg, E. A., Koch, M. A., Von Konrat, M., Könyves, K., Kutchan, T. M., Lam, V., Larsson, A., Leitch, A. R., Lentz, R., Li, F.-W., Lowe, A. J., Ludwig, M., Manos, P. S., Mavrodiev, E., McCormick, Melissa K., McKain, M., McLellan, T., McNeal, J. R., Miller, R. E., Nelson, M. N., Peng, Y., Ralph, P., Real, D., Riggins, C. W., Ruhsam, M., Sage, R. F., Sakai, A. K., Scascitella, M., Schilling, E. E., Schlösser, E. M., Sederoff, H., Servick, S., Sessa, E. B., Shaw, A. J., Shaw, S. W., Sigel, E. M., Skema, C., Smith, A. G., Smithson, A., Stewart, C. N., Stinchcombe, J. R., Szövényi, P., Tate, J. A., Tiebel, H., Trapnell, D., Villegente, M., Wang, C. N., Weller, S. G., Wenzel, M., Weststrand, S., Westwood, J. H., Whigham, D. F., Wu, S., Wulff, A. S., Yang, Y., Zhu, D., Zhuang, C., Zuidof, J., Chase, M. W., Pires, J. C., Rothfels, C. J., Yu, J., Chen, C., Chen, L., Cheng, S., Li, J., Li, R., Li, X., Lu, H., Ou, X., Sun, X., Tan, X., Tang, J., Tian, Z., Wang, F., Wang, J., Wei, X., Xu, X., Yan, Z., Yang, F., Zhong, X., Zhou, F., Zhu, Y., Zhang, Y., Ayyampalayam, S., Barkman, T. J., Nguyen, N., Matasci, N., Nelson, D. R., Sayyari, E., Wafula, E. K., Walls, R. L., Warnow, T., An, H., Arrigo, N., Baniaga, A. E., Galuska, S., Jorgensen, S. A., Kidder, T. I., Kong, H., Lu-Irving, P., Marx, H. E., Qi, X., Reardon, C. R., Sutherland, B. L., Tiley, G. P., Welles, S. R., Yu, R., Zhan, S., Gramzow, L., Theißen, G., Wong, G. K. S. (2019). One thousand plant transcriptomes and the phylogenomics of green plants. Nature 574:679-685. DOI
2018Villaverde, T., Pokorny, L., Olsson, S., Rincón-Barrado, M., Johnson, M.G., Gardner, E.M., Wickett, N.J., Molero, J., Riina, R., Sanmartín, I. (2018). Bridging the micro- and macroevolutionary levels in phylogenomics: Hyb-Seq solves relationships from populations to species and above. New Phytologist 220:636-650. Open Access
2017Mairal, M., Sanmartín, I., Herrero, A., Pokorny, L., Vargas, P., Aldasoro, J.J., Alarcón, M. (2017). Geographic barriers and Pleistocene climate change shaped patterns of genetic variation in the Eastern Afromontane biodiversity hotspot. Scientific Reports 7:e45749. Open Access
2015Delaux, P.M., Radhakrishnan, G.V., Jayaraman, D., Cheema, J., Malbreil, M., Volkening, J.D., Sekimoto, H., Nishiyama, T., Melkonian, M., Pokorny, L., Rothfels, C.J., Sederoff, H.W., Stevenson, D.W., Surek, B., Zhang, Y., Sussman, M.R., Dunand, C., Morris, R.J., Roux, C., Wong, G.K.S., Oldroyd, G.E.D., Ane, J.M. (2015). Algal ancestor of land plants was preadapted for symbiosis. Proceedings of the National Academy of Sciences of the United States of America 112(43):13390-13395. DOI
2015Mairal, M., Pokorny, L., Aldasoro, J.J., Alarcón, M., Sanmartín, I. (2015). Ancient vicariance and climate-driven extinction continental-wide disjunctions in Africa: The case of the Rand Flora genus Canarina (Campanulaceae). Molecular Ecology 24(6):1335-1354. DOI
2015Pokorny, L., Riina, R., Mairal, M., Meseguer, A.S., Culshaw, V., Cendoya, J., Serrano, M., Carbajal, R., Ortiz, S., Heuertz, M., Sanmartín, I. (2015). Living on the edge: Timing of Rand Flora disjunctions congruent with ongoing aridification in Africa. Frontiers in Genetics 6(MAY):154. Open Access
2015Rothfels, C.J., Li, F.-W., Sigel, E.M., Huiet, L., Larsson, A., Burge, D.O., Ruhsam, M., Deyholos, M., Soltis, D.E., Stewart, C.N., Shaw, S.W., Pokorny, L., Chen, T., Depamphilis, C., DeGironimo, L., Chen, L., Wei, X., Sun, X., Korall, P., Stevenson, D.W., Graham, S.W., Wong, G.K.-S., Pryer, K.M. (2015). The evolutionary history of ferns inferred from 25 low-copy nuclear genes. American Journal of Botany 102(7):1089-1107. Open Access
2014Li, F.-W., Villarreal, J.C., Kelly, S., Rothfels, C.J., Melkonian, M., Frangedakis, E., Ruhsam, M., Sigel, E.M., Der, J.P., Pittermann, J., Burge, D.O., Pokorny, L., Larsson, A., Chen, T., Weststrand, S., Thomas, P., Carpenter, E., Zhang, Y., Tian, Z., Chen, L., Yan, Z., Zhu, Y., Sun, X., Wang, J., Stevenson, D.W., Crandall-Stotler, B.J., Shaw, A.J., Deyholos, M.K., Soltis, D.E., Graham, S.W., Windham, M.D., Langdale, J.A., Wong, G.K.-S., Mathews, S., Pryer, K.M. (2014). Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns. Proceedings of the National Academy of Sciences of the United States of America 111(18):6672-6677. DOI
2014Matasci, N., Hung, L.H., Yan, Z., Carpenter, E.J., Wickett, N.J., Mirarab, S., Nguyen, N., Warnow, T., Ayyampalayam, S., Barker, M., Burleigh, J.G., Gitzendanner, M.A., Wafula, E., Der, J.P., dePamphilis, C.W., Roure, B., Philippe, H., Ruhfel, B.R., Miles, N.W., Graham, S.W., Mathews, S., Surek, B., Melkonian, M., Soltis, D.E., Soltis, P.S., Rothfels, C., Pokorny, L., Shaw, J.A., DeGironimo, L., Stevenson, D.W., Villarreal, J.C., Chen, T., Kutchan, T.M., Rolf, M., Baucom, R.S., Deyholos, M.K., Samudrala, R., Tian, Z., Wu, X., Sun, X., Zhang, Y., Wang, J., Leebens-Mack, J., Wong, G.K.S. (2014). Data access for the 1,000 Plants (1KP) project. GigaScience 3(1):17. Open Access
2014Wickett, N.J., Mirarab, S., Nguyen, N., Warnow, T., Carpenter, E., Matasci, N., Ayyampalayam, S., Barker, M.S., Burleigh, J.G., Gitzendanner, M.A., Ruhfel, B.R., Wafula, E., Der, J.P., Graham, S.W., Mathews, S., Melkonian, M., Soltis, D.E., Soltis, P.S., Miles, N.W., Rothfels, C.J., Pokorny, L., Shaw, A.J., De Gironimo, L., Stevenson, D.W., Surek, B., Villarreal, J.C., Roure, B., Philippe, H., De Pamphilis, C.W., Chen, T., Deyholos, M.K., Baucom, R.S., Kutchan, T.M., Augustin, M.M., Wang, J., Zhang, Y., Tian, Z., Yan, Z., Wu, X., Sun, X., Wong, G.K.-S., Leebens-Mack, J. (2014). Phylotranscriptomic analysis of the origin and early diversification of land plants. Proceedings of the National Academy of Sciences of the United States of America 111(45):E4859-E4868. DOI
2022Gardner, E.M., Ahmad, Puad, A.S., Pereira, J.T., Tagi, J.A., Nyegang, S.A., Miun, P., Jumian, J., Pokorny, L., Zerega, N.J.C. (2022). Engagement with indigenous people preserves local knowledge and biodiversity alike. Current Biology 32(11):R511-R512. DOI
2022López-Mañas R., Pascual-Díaz J.P., García-Berro A., Bahleman F., Reich M.S., Pokorny L., Bataille C.P., Vila R., Domingo-Marimon C., Talavera G. (2022). Erratic spatiotemporal vegetation growth anomalies drive population outbreaks in a trans-Saharan insect migrant. Proceedings of the National Academy of Sciences of the United States of America 119(19):e2121249119. Open Access
2022Baker W.J., Bailey P., Barber V., Barker A., Bellot S., Bishop D., Botigué L.R., Brewer G., Carruthers T., Clarkson J.J., Cook J., Cowan R.S., Dodsworth S., Epitawalage N., Françoso E., Gallego B., Johnson M.G., Kim J.T., Leempoel K., Maurin O., McGinnie, C., Pokorny, L., Roy, S., Stone, M., Toledo, E., Wickett, N.J., Zuntini, A.R., Eiserhardt, W.L., Kersey, P.J., Leitch, I.J., Forest, F. (2022). A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life. Systematic Biology 71(2):301-319. Open Access
2022Liimatainen K., Kim J.T., Pokorny L., Kirk P.M., Dentinger B., Niskanen T. (2022). Taming the beast: a revised classification of Cortinariaceae based on genomic data. Fungal Diversity 112(1):89-170. Open Access
2021McDonnell A.J., Baker W.J., Dodsworth S., Forest F., Graham S.W., Johnson M.G., Pokorny L., Tate J., Wicke S., Wickett N.J. (2021). Exploring Angiosperms353: Developing and applying a universal toolkit for flowering plant phylogenomics. Applications in Plant Sciences 9(7):APS311443. Open Access
2021Baker W.J., Dodsworth S., Forest F., Graham S.W., Johnson M.G., McDonnell A., Pokorny L., Tate J.A., Wicke S., Wickett N.J. (2021). Exploring Angiosperms353: An open, community toolkit for collaborative phylogenomic research on flowering plants. American Journal of Botany 108(7):1059-1065. Open Access
2021Maurin, O., Anest, A., Bellot, S., Biffin, E., Brewer, G., Charles-Dominique, T., Cowan, R.S., Dodsworth, S., Epitawalage, N., Gallego, B., Giaretta, A., Goldenberg, R., Gonçalves, D.J.P., Graham, S., Hoch, P., Mazine, F., Low, Y.W., McGinnie, C., Michelangeli, F.A., Morris, S., Penneys, D.S., Pérez Escobar, O.A., Pillon, Y., Pokorny, L., Shimizu, G., Staggemeier, V.G., Thornhill, A.H., Tomlinson, K.W., Turner, I.M., Vasconcelos, T., Wilson, P.G., Zuntini, A.R., Baker, W.J., Forest, F., Lucas, E. (2021). A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set. American Journal of Botany 108(7):1087-1111. Open Access
2021Siniscalchi C.M., Hidalgo O., Palazzesi L., Pellicer J., Pokorny L., Maurin O., Leitch I.J., Forest F., Baker W.J., Mandel J.R. (2021). Lineage-specific vs. universal: A comparison of the Compositae1061 and Angiosperms353 enrichment panels in the sunflower family. Applications in Plant Sciences 9(7):APS311422. Open Access
2021Thomas S.K., Liu X., Du Z.-Y., Dong Y., Cummings A., Pokorny L., Xiang Q.-Y., Leebens-Mack J.H. (2021). Comprehending Cornales: phylogenetic reconstruction of the order using the Angiosperms353 probe set. American Journal of Botany 108(7):1112-1121. Open Access
2021Larridon, I., Zuntini, A.R., Léveillé-Bourret, É., Barrett, R.L., Starr, J.R., Muasya, A.M., Villaverde, T., Bauters, K., Brewer, G.E., Bruhl, J.J., Costa, S.M., Elliott, T.L., Epitawalage, N., Escudero, M., Fairlie, I., Goetghebeur, P., Hipp, A.L., Jiménez-Mejías, P., Sabino Kikuchi, I.A.B., Luceño, M., Márquez-Corro, J.I., Martín-Bravo, S., Maurin, O., Pokorny, L., Roalson, E.H., Semmouri, I., Simpson, D.A., Spalink, D., Thomas, W.W., Wilson, K.L., Xanthos, M., Forest, F., Baker, W.J. (2021). A new classification of Cyperaceae (Poales) supported by phylogenomic data. Journal of Systematics and Evolution 59(4):852-895. Open Access
2021Zuntini A.R., Frankel L.P., Pokorny L., Forest F., Baker W.J. (2021). A comprehensive phylogenomic study of the monocot order Commelinales, with a new classification of Commelinaceae. American Journal of Botany 108(7):1066-1086. Open Access
2021Antonelli A., Clarkson J.J., Kainulainen K., Maurin O., Brewer G.E., Davis A.P., Epitawalage N., Goyder D.J., Livshultz T., Persson C., Pokorny L., Straub S.C.K., Struwe L., Zuntini A.R., Forest F., Baker W.J. (2021). Settling a family feud: a high-level phylogenomic framework for the Gentianales based on 353 nuclear genes and partial plastomes. American Journal of Botany 108(7):1143-1165. Open Access
2021Starr J.R., Jiménez-Mejías P., Zuntini A.R., Léveillé-Bourret É., Semmouri I., Muasya M., Baker W.J., Brewer G.E., Epitawalage N., Fairlie I., Forest F., Sabino Kikuchi I.A.B., Pokorny L., Larridon I. (2021). Targeted sequencing supports morphology and embryo features in resolving the classification of Cyperaceae tribe Fuireneae s.l.. Journal of Systematics and Evolution 59(4):809-832. Open Access
2021Larridon I., Zuntini A.R., Barrett R.L., Wilson K.L., Bruhl J.J., Goetghebeur P., Baker W.J., Brewer G.E., Epitawalage N., Fairlie I., Forest F., Sabino Kikuchi I.A.B., Pokorny L., Semmouri I., Spalink D., Simpson D.A., Muasya A.M., Roalson E.H. (2021). Resolving generic limits in Cyperaceae tribe Abildgaardieae using targeted sequencing. Botanical Journal of the Linnean Society 196(2):163-187. DOI
2020Hale H., Gardner E.M., Viruel J., Pokorny L., Johnson M.G. (2020). Strategies for reducing per-sample costs in target capture sequencing for phylogenomics and population genomics in plants. Applications in Plant Sciences 8(4):e11337. Open Access
2020Bell D., Lin Q., Gerelle W.K., Joya S., Chang Y., Taylor Z.N., Rothfels C.J., Larsson A., Villarreal J.C., Li F.-W., Pokorny L., Szövényi P., Crandall-Stotler B., DeGironimo L., Floyd S.K., Beerling D.J., Deyholos, M.K., von Konrat, M., Ellis, S., Shaw, A.J., Chen, T., Wong, G.K.S., Stevenson, D.W., Palmer, J.D., Graham, S.W. (2020). Organellomic data sets confirm a cryptic consensus on (unrooted) land-plant relationships and provide new insights into bryophyte molecular evolution. American Journal of Botany 107(1):91-115. Open Access
2019Dodsworth S., Pokorny L., Johnson M.G., Kim J.T., Maurin O., Wickett N.J., Forest F., Baker W.J. (2019). Hyb-Seq for Flowering Plant Systematics. Trends in Plant Science 24(10):887-891. DOI
2019Brewer G.E., Clarkson J.J., Maurin O., Zuntini A.R., Barber V., Bellot S., Biggs N., Cowan R.S., Davies N.M.J., Dodsworth S., Edwards S.L., Eiserhardt W.L., Epitawalage N., Frisby S., Grall A., Kersey P.J., Pokorny L., Leitch I.J., Forest F., Baker W.J. (2019). Factors Affecting Targeted Sequencing of 353 Nuclear Genes From Herbarium Specimens Spanning the Diversity of Angiosperms. Frontiers in Plant Science 10:1102. Open Access
2019Viruel J., Conejero M., Hidalgo O., Pokorny L., Powell R.F., Forest F., Kantar M.B., Soto Gomez M., Graham S.W., Gravendeel B., Wilkin P., Leitch I.J. (2019). A Target Capture-Based Method to Estimate Ploidy From Herbarium Specimens. Frontiers in Plant Science 10:937. Open Access
2019Johnson M.G., Pokorny L., Dodsworth S., Botigué L.R., Cowan R.S., Devault A., Eiserhardt W.L., Epitawalage N., Forest F., Kim J.T., Leebens-Mack J.H., Leitch I.J., Maurin O., Soltis D.E., Soltis P.S., Wong G.K.-S., Baker W.J., Wickett N.J. (2019). A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering. Systematic Biology 68(4):594-606. Open Access
2019Soto Gomez M., Pokorny L., Kantar M.B., Forest F., Leitch I.J., Gravendeel B., Wilkin P., Graham S.W., Viruel J. (2019). A customized nuclear target enrichment approach for developing a phylogenomic baseline for Dioscorea yams (Dioscoreaceae). Applications in Plant Sciences 7(6):e11254. Open Access
2018Eiserhardt W.L., Antonelli A., Bennett D.J., Botigué L.R., Burleigh J.G., Dodsworth S., Enquist B.J., Forest F., Kim J.T., Kozlov A.M., Leitch I.J., Maitner B.S., Mirarab S., Piel W.H., Pérez-Escobar O.A., Pokorny L., Rahbek C., Sandel, B., Smith, S.A., Stamatakis, A., Vos, R.A., Warnow, T., Baker, W.J. (2018). A roadmap for global synthesis of the plant tree of life. American Journal of Botany 105(3):614-622. Open Access
2012Ho B.-C., Pokorny L., Tan B.C., Frahm J.-P., Shaw A.J., Quandt D. (2012). Molecular evolution and diversification of the moss family Daltoniaceae (Hookeriales, Bryophyta) with emphasis on the unravelling of the phylogeny of Distichophyllum and its allies. Botanical Journal of the Linnean Society 170(2):157-175. Open Access
2012Pokorny L., Ho B.-C., Frahm J.-P., Quandt D., Shaw A.J. (2012). Phylogenetic analyses of morphological evolution in the gametophyte and sporophyte generations of the moss order Hookeriales (Bryopsida). Molecular Phylogenetics and Evolution 63(2):351-364. DOI
2012Huttunen S., Bell N., Bobrova V.K., Buchbender V., Buck W.R., Cox C.J., Goffinet B., Hedenäs L., Ho B.-C., Ignatov M.S., Krug M., Kuznetsova O., Milyutina I.A., Newton A., Olsson S., Pokorny L., Shaw J.A., Stech M., Troitsky A., Vanderpoorten A., Quandt , D. (2012). Disentangling knots of rapid evolution: Origin and diversification of the moss order Hypnales. Journal of Bryology 34(3):187-211. DOI
2011Pokorny L., Oliván G., Shaw A.J. (2011). Phylogeographic patterns in two Southern Hemisphere species of calyptrochaeta (Daltoniaceae, Bryophyta). Systematic Botany 36(3):542-553. DOI
2008Shaw A.J., Pokorny L., Shaw B., Ricca M., Boles S., Szövényi P. (2008). Genetic structure and genealogy in the Sphagnum subsecundum complex (Sphagnaceae: Bryophyta). Molecular Phylogenetics and Evolution 49(1):304-317. DOI
2006Pokorny L., Lara F., Mazimpaka V. (2006). The bryophyte flora of the city of Trento (North Italy). Cryptogamie, Bryologie 27(2):265-284. Open Access
2004Blockeel T.L., Bednarek-Ochyra H., Ochyra R., Çetin B., Keçeli T., Lara F., Mazimpaka V., Pokorny L., Matteri C.M., O'Shea B.J., Schiavone M.M., Stefanut S., Uyar G. (2004). New national and regional bryophyte records, 9. Journal of Bryology 26(1):63-66. DOI
Capítulos de libros
2023Viruel, J., Hidalgo, O., Pokorny, L., Forest, F., Gravendeel, B., Wilkin, P., Leitch, I.J. (2023). A Bioinformatic Pipeline to Estimate Ploidy Level from Target Capture Sequence Data Obtained from Herbarium Specimens. In: Heitkam, T., Garcia, S. (eds.) Plant Cytogenetics and Cytogenomics. Methods in Molecular Biology, vol 2672. Humana, New York, NY. pp. 115-126. DOI
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